Basic Information
Locus ID:
gene_19606
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_1_Chr_9 | 5992712 | 5993980 | + | gene_19606 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.37 | 30,951.17 Da | 33.32 | 84.02 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12678 | RING-H2 zinc finger domain | 205 | 262 | 1.3E-9 | IPR024766 |
| SUPERFAMILY | SSF57850 | RING/U-box | 196 | 266 | 5.79E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 192 | 269 | 3.2E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 206 | 261 | 3.4E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 206 | 262 | 12.120453 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14970.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021768540.1 | E3 ubiquitin-protein ligase SIRP1-like [Chenopodium quinoa] | 0 |
| TrEMBL | A0A565C9P3 | RING-type domain-containing protein OS=Arabis nemorensis OX=586526 GN=ANE_LOCUS20817 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 12 | gene_13763, gene_13765, gene_17629, gene_17723, gene_17724 ... |