Basic Information
Locus ID:
gene_19595
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Short Name:
CPK30
Description:
calcium-dependent protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_1_Chr_9 | 5793528 | 5799329 | + | gene_19595 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.05 | 61,459.65 Da | 37.24 | 85.75 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 436 | 498 | 1.62674E-18 | IPR002048 |
| CDD | cd05117 | STKc_CAMK | 58 | 316 | 9.0407E-139 | - |
| Pfam | PF13499 | EF-hand domain pair | 365 | 424 | 1.3E-9 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 60 | 317 | 1.1E-76 | IPR000719 |
| Pfam | PF13499 | EF-hand domain pair | 435 | 498 | 5.9E-14 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 345 | 524 | 6.82E-45 | IPR011992 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 32 | 337 | 2.29E-87 | IPR011009 |
| Gene3D | G3DSA:1.10.238.10 | - | 327 | 501 | 5.2E-52 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 60 | 144 | 2.4E-28 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 145 | 326 | 2.2E-61 | - |
| SMART | SM00054 | efh_1 | 436 | 464 | 0.014 | IPR002048 |
| SMART | SM00220 | serkin_6 | 59 | 317 | 9.3E-99 | IPR000719 |
| SMART | SM00054 | efh_1 | 364 | 392 | 9.4E-6 | IPR002048 |
| SMART | SM00054 | efh_1 | 472 | 500 | 8.6E-8 | IPR002048 |
| SMART | SM00054 | efh_1 | 400 | 428 | 0.0051 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 468 | 503 | 14.931837 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 432 | 467 | 12.839682 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 396 | 431 | 10.3012 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 360 | 395 | 14.987627 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 59 | 317 | 48.710724 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 179 | 191 | - | IPR008271 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 481 | 493 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 445 | 457 | - | IPR018247 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 65 | 88 | - | IPR017441 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 373 | 385 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 409 | 421 | - | IPR018247 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G18890.1 | calcium-dependent protein kinase 1. encodes a calcium-dependent protein kinase whose gene expression is induced by dehydration and high salt. Kinase activity could not be detected in vitro. | 0 |
| RefSeq | XP_010678598.1 | calcium-dependent protein kinase 10 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9M9V8 | Calcium-dependent protein kinase 10 OS=Arabidopsis thaliana OX=3702 GN=CPK10 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803M1C0 | Calcium-dependent protein kinase 30 OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology