Basic Information
Locus ID:
gene_19594
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Zinc ion binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_1_Chr_9 | 5733641 | 5745371 | + | gene_19594 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.05 | 23,646.40 Da | 49.87 | 56.91 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14599 | Zinc-ribbon | 145 | 202 | 2.3E-25 | IPR039512 |
| Pfam | PF13639 | Ring finger domain | 96 | 139 | 1.2E-8 | IPR001841 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 35 | 89 | 2.35E-16 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 96 | 147 | 1.97E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 91 | 142 | 5.0E-11 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 169 | 204 | 7.3E-18 | - |
| SMART | SM00184 | ring_2 | 98 | 139 | 7.1E-5 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 1 | 31 | 10.028894 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 98 | 140 | 11.323791 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 34 | 97 | 27.115389 | IPR017921 |
| Coils | Coil | Coil | 200 | 204 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G74770.1 | zinc ion binding. | 0 |
| RefSeq | XP_023905872.1 | zinc finger protein BRUTUS-like At1g74770 isoform X2 [Quercus suber] | 0 |
| F4HVS0 | Zinc finger protein BRUTUS-like At1g74770 OS=Arabidopsis thaliana OX=3702 GN=At1g74770 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9EN61 | Zinc finger protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology