Basic Information
Locus ID:
gene_19587
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_1_Chr_9 | 5655959 | 5657868 | + | gene_19587 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.50 | 39,256.44 Da | 47.62 | 92.02 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF81383 | F-box domain | 6 | 109 | 4.97E-6 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 4 | 45 | 2.0E-5 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021837861.1 | uncharacterized protein LOC110777568 [Spinacia oleracea] | 0 |
| TrEMBL | A0A0K9RTW8 | DUF295 domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_029500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg34713 |
| Aizoaceae | Mesembryanthemum crystallinum | 9 | gene_19582, gene_19584, gene_19585, gene_19586, gene_19587 ... |
| Amaranthaceae | Atriplex hortensis | 8 | Ah000578, Ah000579, Ah003817, Ah027104, Ah027105, Ah027106 ... |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g063530 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl56149, Sgl60852 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000019527, gene:ENSEOMG00000021140 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1BG0002490, CQ.Regalona.r1.6AG0002800 |