Basic Information
Locus ID:
gene_19546
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
F-box protein At5g07610-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_1_Chr_9 | 4894048 | 4895451 | + | gene_19546 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.76 | 47,791.76 Da | 53.55 | 71.50 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 22 | 60 | 2.0E-11 | IPR001810 |
| Pfam | PF07734 | F-box associated | 229 | 362 | 3.6E-5 | IPR006527 |
| SUPERFAMILY | SSF81383 | F-box domain | 24 | 68 | 9.94E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 15 | 58 | 5.3E-6 | - |
| SMART | SM00256 | fbox_2 | 22 | 62 | 1.3E-8 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 126 | 323 | 1.0E-18 | IPR017451 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G47730.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_021761284.1 | F-box/LRR-repeat/kelch-repeat protein At2g27520-like [Chenopodium quinoa] | 0 |
| Q9SXA0 | Putative F-box protein At1g47730 OS=Arabidopsis thaliana OX=3702 GN=At1g47730 PE=4 SV=1 | 0 | |
| TrEMBL | A0A803MXI1 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 29 | gene_12224, gene_12225, gene_12226, gene_12227, gene_12228 ... |
| Amaranthaceae | Atriplex hortensis | 24 | Ah000678, Ah000681, Ah000683, Ah000684, Ah000689, Ah000693 ... |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g116570 |
| Amaranthaceae | Salicornia bigelovii | 6 | Sbi_jg21175, Sbi_jg22628, Sbi_jg30470, Sbi_jg30490 ... |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg16516, Seu_jg28633, Seu_jg28651 |
| Amaranthaceae | Suaeda aralocaspica | 5 | GOSA_00014232, GOSA_00014233, GOSA_00014978, GOSA_00014983 ... |
| Amaranthaceae | Suaeda glauca | 31 | Sgl01161, Sgl01173, Sgl06260, Sgl10884, Sgl12033, Sgl12232 ... |
| Amaranthaceae | Chenopodium album | 18 | gene:ENSEOMG00000005540, gene:ENSEOMG00000005896 ... |
| Amaranthaceae | Chenopodium quinoa | 23 | CQ.Regalona.r1.1AG0004930, CQ.Regalona.r1.5AG0021990 ... |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G10874, Lb3G17282 |
| Portulacaceae | Portulaca oleracea | 15 | evm.TU.LG01.2534, evm.TU.LG01.2535, evm.TU.LG01.2536 ... |