Basic Information
Locus ID:
gene_19539
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_1_Chr_9 | 4828677 | 4836104 | + | gene_19539 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.20 | 63,884.60 Da | 50.97 | 69.35 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 301 | 489 | 1.6E-14 | IPR017451 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 167 | 215 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 153 | 215 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 112 | 132 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021842514.1 | F-box/kelch-repeat protein At3g23880-like [Spinacia oleracea] | 0 |
| TrEMBL | A0A0K9R765 | F-box domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_104000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 5 | gene_16691, gene_18522, gene_19539, gene_19766, gene_9814 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg52837 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9037 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103717452 |
| Solanaceae | Solanum chilense | 1 | SOLCI004904300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007023 |