Basic Information
Locus ID:
gene_19504
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_1_Chr_9 | 4087871 | 4090515 | + | gene_19504 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.24 | 38,543.84 Da | 44.59 | 82.64 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 210 | 242 | 0.01 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 14 | 340 | 7.83E-32 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 100 | 348 | 2.0E-31 | IPR015943 |
| SMART | SM00320 | WD40_4 | 112 | 151 | 54.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 199 | 242 | 0.0033 | IPR001680 |
| SMART | SM00320 | WD40_4 | 57 | 98 | 100.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 292 | 341 | 12.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 156 | 196 | 1.6 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 209 | 245 | 8.755605 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 209 | 245 | 10.408196 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 229 | 243 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G63010.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_021857820.1 | diphthine methyltransferase homolog [Spinacia oleracea] | 0 |
| Q55C80 | Diphthine methyltransferase homolog OS=Dictyostelium discoideum OX=44689 GN=wdr85 PE=3 SV=1 | 0 | |
| TrEMBL | A0A0K9R5U8 | WD_REPEATS_REGION domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_103340 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg18053, jg31519 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19504 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g117350 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg30556, Sbi_jg30557, Sbi_jg58691 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg28557 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55213, Sgl60461 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000005718, gene:ENSEOMG00000022165 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0023170, CQ.Regalona.r1.5BG0024630 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30139450 |
| Arecaceae | Cocos nucifera | 1 | COCNU_13G000380 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103723134 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.557.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G09359, Ftri18G33905 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G63010.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10004522m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g26140.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g011430.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1958 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G2145 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g01450 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0373s00004.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate03g03710, gene.Thate03g12940 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-12510 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.726 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00000772 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G01544, Lb1G01548 |
| Poaceae | Echinochloa crus-galli | 1 | AH09.1506 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0311320, gene-QOZ80_4BG0342540 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0180380.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_044989 |
| Poaceae | Oryza coarctata | 2 | Oco07G010280, Oco08G010080 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g42880.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G153900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0302167 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr21G007150, Chr23G009200, Chr25G010560, Chr30G010270 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G631900 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2AG052560, gene_TRIDC2AG052900 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G362900.1, TraesCS2B02G380800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb426250_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-5225, nbis-gene-5226 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g21587 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.959, evm.TU.LG09.1003 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g03220 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.1907 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-23443 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-1746 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13808 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.147 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00006146 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-12891 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-16284 |
| Salicaceae | Populus euphratica | 2 | populus_peu30150, populus_peu37227 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132641970 |
| Solanaceae | Solanum chilense | 1 | SOLCI000252600 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107019235, gene-LOC107020437 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.17566_chr09_-, gene_5014 |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G2521 |
| Zosteraceae | Zostera marina | 1 | Zosma01g41900.v3.1 |