Basic Information
Locus ID:
gene_19492
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
F-box protein At3g07870-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_1_Chr_9 | 3850643 | 3851337 | + | gene_19492 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.01 | 22,386.59 Da | 35.11 | 84.84 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 9 | 47 | 4.3E-10 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 6 | 56 | 1.44E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 8 | 45 | 5.7E-6 | - |
| SMART | SM00256 | fbox_2 | 10 | 50 | 5.4E-9 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 4 | 50 | 8.623154 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G17620.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_047254712.1 | F-box/kelch-repeat protein At3g23880 isoform X5 [Capsicum annuum] | 0 |
| Q9LUN5 | Putative F-box protein At3g17620 OS=Arabidopsis thaliana OX=3702 GN=At3g17620 PE=4 SV=1 | 0 | |
| TrEMBL | A0A251QZQ1 | F-box domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_1G188300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19492 |
| Brassicaceae | Brassica nigra | 1 | BniB04g002080.2N |
| Portulacaceae | Portulaca oleracea | 10 | evm.TU.LG01.2444, evm.TU.LG01.2445, evm.TU.LG01.2446 ... |