Basic Information
Locus ID:
gene_19483
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Belongs to the histone deacetylase family. HD Type 1 subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_1_Chr_9 | 3774484 | 3780193 | + | gene_19483 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.50 | 51,457.86 Da | 49.35 | 71.23 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09991 | HDAC_classI | 34 | 362 | 0.0 | - |
| Pfam | PF00850 | Histone deacetylase domain | 48 | 360 | 5.1E-84 | IPR023801 |
| SUPERFAMILY | SSF52768 | Arginase/deacetylase | 29 | 414 | 4.75E-124 | IPR023696 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 20 | 428 | 1.9E-136 | IPR037138 |
| PIRSF | PIRSF037913 | HDAC_I_euk | 122 | 461 | 2.3E-172 | IPR003084 |
| PIRSF | PIRSF037913 | HDAC_I_euk | 7 | 108 | 1.4E-28 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 180 | 203 | 1.7E-24 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 83 | 101 | 1.7E-13 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 50 | 67 | 1.7E-13 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 212 | 227 | 1.7E-24 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 297 | 307 | 1.7E-24 | IPR000286 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 439 | 464 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 418 | 464 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G63110.1 | histone deacetylase 6. RPD3-like histone deacetylase. HDA6 mutations specifically increase the expression of auxin-responsive transgenes, suggesting a role in transgene silencing. | 0 |
| RefSeq | XP_021733555.1 | histone deacetylase 6-like [Chenopodium quinoa] | 0 |
| Q9FML2 | Histone deacetylase 6 OS=Arabidopsis thaliana OX=3702 GN=HDA6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RE39 | Histone deacetylase OS=Spinacia oleracea OX=3562 GN=SOVF_077050 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology