Basic Information
Locus ID:
gene_19473
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_1_Chr_9 | 3628280 | 3633743 | + | gene_19473 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.51 | 81,884.66 Da | 44.16 | 81.79 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 385 | 425 | 8.3E-10 | IPR001810 |
| Pfam | PF12165 | Alfin | 246 | 370 | 1.3E-44 | IPR021998 |
| SUPERFAMILY | SSF81383 | F-box domain | 384 | 434 | 9.16E-12 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 381 | 433 | 1.5E-9 | - |
| SMART | SM00256 | fbox_2 | 385 | 425 | 1.1E-10 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 483 | 649 | 5.0E-13 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 379 | 426 | 12.915247 | IPR001810 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G26210.1 | alfin-like 4. AL4 encodes a member of the Alfin-Like family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA. | 0 |
| RefSeq | XP_021835394.1 | F-box protein CPR30-like [Spinacia oleracea] | 0 |
| O81488 | PHD finger protein ALFIN-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=AL4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9R2Q0 | F-box domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_113610 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_13621, gene_19473 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah000520 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55128, Sgl60381 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000006337, gene:ENSEOMG00000020306 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0023690, CQ.Regalona.r1.5BG0025170 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG01.2416 |