Basic Information
Locus ID:
gene_19392
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_1_Chr_9 | 2612049 | 2614927 | + | gene_19392 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.13 | 65,215.43 Da | 54.46 | 67.39 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 124 | 176 | 8.48735E-13 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 283 | 323 | 1.4E-6 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 195 | 259 | 1.3E-12 | IPR002867 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 541 | 564 | 3.34E-5 | IPR036443 |
| SUPERFAMILY | SSF57850 | RING/U-box | 278 | 326 | 3.53E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 209 | 265 | 9.77E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 122 | 207 | 4.62E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 120 | 206 | 2.0E-16 | IPR013083 |
| Gene3D | G3DSA:4.10.1060.10 | - | 538 | 566 | 2.0E-5 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 255 | 507 | 9.8E-73 | - |
| SMART | SM00547 | zf_4 | 542 | 566 | 1.8E-4 | IPR001876 |
| SMART | SM00647 | ibrneu5 | 267 | 326 | 0.022 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 195 | 259 | 8.4E-19 | IPR002867 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 124 | 175 | 8.638745 | IPR001841 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 120 | 330 | 44.373085 | IPR044066 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 540 | 567 | 8.569291 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 544 | 563 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 508 | 530 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_021752733.1 | probable E3 ubiquitin-protein ligase ARI7 [Chenopodium quinoa] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9A7G8 | RBR-type E3 ubiquitin transferase OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology