Basic Information
Locus ID:
gene_19378
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Homocysteine s-methyltransferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_1_Chr_9 | 2410063 | 2416763 | + | gene_19378 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.10 | 36,743.85 Da | 31.99 | 91.24 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02574 | Homocysteine S-methyltransferase | 22 | 330 | 6.5E-77 | IPR003726 |
| SUPERFAMILY | SSF82282 | Homocysteine S-methyltransferase | 17 | 334 | 6.67E-84 | IPR036589 |
| Gene3D | G3DSA:3.20.20.330 | - | 8 | 329 | 1.3E-101 | IPR036589 |
| PIRSF | PIRSF037505 | BHMT | 7 | 109 | 7.0E-8 | IPR017226 |
| PIRSF | PIRSF037505 | BHMT | 283 | 336 | 36.0 | IPR017226 |
| ProSiteProfiles | PS50970 | Homocysteine-binding domain profile. | 9 | 331 | 46.952797 | IPR003726 |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G63250.1 | homocysteine methyltransferase 2. Encodes a homocysteine methyltransferase (HMT). Among the three HMT coding genes in the genome, HMT2 is responsible for a significant proportion of HMT activity in the flower stalks and silique hulls. However, HMT2 does not significantly contribute to the total HMT activity in seeds. | 0 |
| RefSeq | XP_010679094.1 | selenocysteine Se-methyltransferase [Beta vulgaris subsp. vulgaris] | 0 |
| Q4VNK0 | Selenocysteine Se-methyltransferase OS=Brassica oleracea var. italica OX=36774 GN=SMT PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QBT1 | Hcy-binding domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_197130 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology