Basic Information
Locus ID:
gene_19353
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Myb SANT-like DNA-binding domain protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_1_Chr_9 | 2017918 | 2026403 | + | gene_19353 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.18 | 65,770.33 Da | 49.05 | 108.97 | 0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17546 | REC_hyHK_CKI1_RcsC-like | 22 | 97 | 9.83033E-24 | - |
| Pfam | PF00072 | Response regulator receiver domain | 22 | 91 | 1.1E-16 | IPR001789 |
| Pfam | PF00646 | F-box domain | 136 | 175 | 3.0E-10 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 275 | 472 | 4.87E-10 | - |
| SUPERFAMILY | SSF52172 | CheY-like | 20 | 94 | 1.42E-20 | IPR011006 |
| SUPERFAMILY | SSF81383 | F-box domain | 135 | 177 | 9.16E-12 | IPR036047 |
| Gene3D | G3DSA:3.40.50.2300 | - | 2 | 117 | 1.1E-24 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 122 | 173 | 6.8E-7 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 177 | 506 | 3.3E-8 | IPR032675 |
| SMART | SM00448 | REC_2 | 19 | 137 | 8.9E-10 | IPR001789 |
| SMART | SM00256 | fbox_2 | 140 | 181 | 2.7E-4 | IPR001810 |
| ProSiteProfiles | PS50110 | Response regulatory domain profile. | 20 | 162 | 26.32049 | IPR001789 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 134 | 182 | 10.34529 | IPR001810 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G26594.1 | response regulator 24. Encodes an atypical subtype of the ARR (Arabidopsis response regulator) protein family . It appears to be expressed in floral buds, mature flowers, and pollen. But, unlike the related ARR22 protein, it does not appear to be expressed at the seed:funiculus junction. | 0 |
| RefSeq | XP_021764328.1 | putative F-box/LRR-repeat protein At3g18150 [Chenopodium quinoa] | 0 |
| F4JZT3 | Two-component response regulator 24 OS=Arabidopsis thaliana OX=3702 GN=ARR24 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QXF3 | F-box domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_135750 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology