Basic Information
Locus ID:
gene_19294
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_1_Chr_9 | 1096751 | 1104782 | + | gene_19294 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.29 | 86,887.92 Da | 48.12 | 94.59 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 260 | 302 | 3.31304E-21 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 542 | 579 | 4.7E-7 | IPR000225 |
| Pfam | PF04564 | U-box domain | 256 | 327 | 4.0E-21 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 581 | 620 | 7.1E-5 | IPR000225 |
| SUPERFAMILY | SSF57850 | RING/U-box | 254 | 329 | 8.64E-27 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 510 | 783 | 3.84E-45 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 255 | 330 | 2.4E-24 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 492 | 584 | 7.1E-12 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 585 | 794 | 2.2E-43 | IPR011989 |
| SMART | SM00185 | arm_5 | 540 | 580 | 0.0018 | IPR000225 |
| SMART | SM00185 | arm_5 | 581 | 621 | 0.1 | IPR000225 |
| SMART | SM00185 | arm_5 | 703 | 743 | 14.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 259 | 322 | 2.6E-28 | IPR003613 |
| SMART | SM00185 | arm_5 | 663 | 702 | 0.02 | IPR000225 |
| SMART | SM00185 | arm_5 | 622 | 662 | 1.9 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 255 | 329 | 36.861797 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 551 | 593 | 12.5824 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 633 | 675 | 10.587399 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 674 | 715 | 11.1824 | IPR000225 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 366 | 429 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 390 | 407 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54790.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_021770146.1 | U-box domain-containing protein 3-like isoform X1 [Chenopodium quinoa] | 0 |
| Q8GWV5 | U-box domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=PUB3 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803LF93 | RING-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg8691 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19294 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah000157 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g121370 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg31389, Sbi_jg57887 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg25519 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00026711 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl54453, Sgl59793 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000007174, gene:ENSEOMG00000023422 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0026570, CQ.Regalona.r1.5BG0028100 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30016270 |
| Apiaceae | Apium graveolens | 1 | Ag10G00889 |
| Arecaceae | Cocos nucifera | 1 | COCNU_08G011920 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103720003 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_Unassigned.72.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri10G00324 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G54790.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10010139m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g07650.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB06g065160.2N, BniB08g069050.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1331 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1400 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g07510 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g00250 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-6357, nbisL1-mrna-9712 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1343 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00002266 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G10270, Lb4G23512, Lb4G23513 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG01.2923, evm.TU.LG02.1213, evm.TU.LG09.755 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g17010 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.1105 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-11573 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6161 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-10286 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.380 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013591 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9909 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-19816 |
| Salicaceae | Populus euphratica | 3 | populus_peu15198, populus_peu15199, populus_peu32866 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132610533 |
| Solanaceae | Solanum chilense | 1 | SOLCI001666900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031342 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.20338_chr09_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G2422 |