Basic Information
Locus ID:
gene_19262
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
PAPA-1-like family protein zinc finger (HIT type) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_1_Chr_9 | 602986 | 608895 | + | gene_19262 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.29 | 67,457.69 Da | 56.50 | 49.04 | -1.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04438 | HIT zinc finger | 541 | 572 | 1.3E-7 | IPR007529 |
| Pfam | PF04795 | PAPA-1-like conserved region | 440 | 525 | 1.9E-19 | IPR006880 |
| SMART | SM01406 | PAPA_1_2 | 440 | 525 | 2.1E-28 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 370 | 397 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 590 | 604 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 498 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 205 | 227 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 431 | 498 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 588 | 615 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 283 | 301 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 398 | 412 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 35 | 61 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 114 | 171 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 309 | 325 | - | - |
| Coils | Coil | Coil | 429 | 466 | - | - |
| Coils | Coil | Coil | 478 | 500 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G47350.1 | HIT zinc finger ;PAPA-1-like conserved region. | 0 |
| RefSeq | XP_010679394.1 | uncharacterized protein LOC104894776 isoform X2 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A0K9RW66 | PAPA-1 domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_027370 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology