Basic Information
Locus ID:
gene_19235
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Polygalacturonase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_1_Chr_9 | 213620 | 217590 | + | gene_19235 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.77 | 49,337.18 Da | 60.99 | 79.23 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 94 | 407 | 2.2E-85 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 51 | 440 | 5.84E-125 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 47 | 436 | 4.3E-117 | IPR012334 |
| SMART | SM00710 | pbh1 | 301 | 322 | 61.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 221 | 247 | 200.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 271 | 291 | 4600.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 198 | 220 | 4900.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 248 | 269 | 980.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 330 | 351 | 1900.0 | IPR006626 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 278 | 291 | - | IPR000743 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G02460.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_010679447.1 | polygalacturonase At1g48100 [Beta vulgaris subsp. vulgaris] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RJD6 | Polygalacturonase At1g80170 OS=Spinacia oleracea OX=3562 GN=SOVF_059980 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology