Basic Information
Locus ID:
gene_19209
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Ubiquitin-2 like Rad60 SUMO-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_10_Chr_8 | 38304156 | 38305653 | + | gene_19209 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.75 | 15,313.92 Da | 37.95 | 54.07 | -0.82 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF11976 | Ubiquitin-2 like Rad60 SUMO-like | 34 | 99 | 9.4E-14 | IPR022617 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 13 | 106 | 1.94E-19 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 105 | 2.0E-24 | - |
| SMART | SM00213 | ubq_7 | 30 | 101 | 0.0066 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 30 | 105 | 11.964792 | IPR000626 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55856.1 | Ubiquitin-like superfamily protein. | 0 |
| RefSeq | XP_034686435.1 | small ubiquitin-related modifier 2-like [Vitis riparia] | 0 |
| Q5E9D1 | Small ubiquitin-related modifier 1 OS=Bos taurus OX=9913 GN=SUMO1 PE=3 SV=1 | 0 | |
| TrEMBL | A0A2I3N8Z0 | Small ubiquitin-related modifier OS=Papio anubis OX=9555 PE=3 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology