Basic Information
Locus ID:
gene_19180
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
receptor protein kinase TMK1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_10_Chr_8 | 37855913 | 37860017 | + | gene_19180 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.67 | 98,824.55 Da | 40.81 | 87.63 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 578 | 851 | 3.99863E-93 | - |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 23 | 58 | 9.1E-4 | IPR013210 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 318 | 356 | 0.042 | IPR013210 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 575 | 843 | 7.5E-46 | IPR001245 |
| Pfam | PF13855 | Leucine rich repeat | 103 | 143 | 1.3E-9 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 378 | 419 | 3.0E-8 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 32 | 298 | 3.66E-47 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 321 | 426 | 2.72E-19 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 548 | 848 | 3.73E-78 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 12 | 317 | 9.7E-72 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 650 | 870 | 4.1E-57 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 319 | 444 | 1.3E-32 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 536 | 649 | 1.9E-35 | - |
| SMART | SM00369 | LRR_typ_2 | 382 | 405 | 1.1 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 181 | 204 | 23.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 84 | 106 | 220.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 406 | 428 | 140.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 572 | 852 | 1.1E-40 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 131 | 152 | 260.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 107 | 130 | 6.3E-4 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 572 | 852 | 40.838085 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 697 | 709 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 578 | 600 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23750.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_010673522.1 | receptor-like kinase TMK4 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9LK43 | Receptor-like kinase TMK4 OS=Arabidopsis thaliana OX=3702 GN=TMK4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9R5X0 | Protein kinase domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_103090 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology