Basic Information
Locus ID:
gene_19178
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_10_Chr_8 | 37837786 | 37844816 | + | gene_19178 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.26 | 114,802.57 Da | 38.84 | 103.29 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 751 | 1015 | 1.19251E-84 | - |
| CDD | cd00118 | LysM | 115 | 164 | 3.30082E-8 | IPR018392 |
| CDD | cd00118 | LysM | 183 | 225 | 1.12734E-6 | IPR018392 |
| Pfam | PF01476 | LysM domain | 183 | 226 | 2.1E-6 | IPR018392 |
| Pfam | PF12799 | Leucine Rich repeats (2 copies) | 599 | 636 | 7.2E-7 | IPR025875 |
| Pfam | PF01476 | LysM domain | 115 | 165 | 1.9E-7 | IPR018392 |
| Pfam | PF13855 | Leucine rich repeat | 301 | 356 | 1.0E-6 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 252 | 273 | 0.0094 | IPR013210 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 534 | 572 | 0.25 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 747 | 1011 | 4.5E-51 | IPR000719 |
| SUPERFAMILY | SSF54106 | LysM domain | 182 | 226 | 3.92E-6 | IPR036779 |
| SUPERFAMILY | SSF52058 | L domain-like | 258 | 643 | 9.98E-46 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 726 | 1014 | 3.55E-74 | IPR011009 |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 113 | 174 | 1.3E-9 | IPR036779 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 535 | 660 | 3.6E-31 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 706 | 819 | 3.2E-33 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 241 | 533 | 5.4E-65 | IPR032675 |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 182 | 226 | 1.4E-7 | IPR036779 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 820 | 1024 | 3.6E-56 | - |
| SMART | SM00369 | LRR_typ_2 | 396 | 419 | 24.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 322 | 345 | 0.16 | IPR003591 |
| SMART | SM00257 | LysM_2 | 182 | 226 | 8.0E-9 | IPR018392 |
| SMART | SM00369 | LRR_typ_2 | 299 | 321 | 190.0 | IPR003591 |
| SMART | SM00257 | LysM_2 | 114 | 165 | 4.0E-6 | IPR018392 |
| SMART | SM00369 | LRR_typ_2 | 598 | 622 | 9.3 | IPR003591 |
| SMART | SM00220 | serkin_6 | 745 | 1018 | 8.2E-36 | IPR000719 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 181 | 225 | 12.390865 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 745 | 1026 | 39.834572 | IPR000719 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 113 | 164 | 10.596818 | IPR018392 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 865 | 877 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 751 | 773 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23750.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_021749180.1 | receptor-like kinase TMK4 [Chenopodium quinoa] | 0 |
| Q9LK43 | Receptor-like kinase TMK4 OS=Arabidopsis thaliana OX=3702 GN=TMK4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LZJ6 | Protein kinase domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology