Basic Information
Locus ID:
gene_19177
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_10_Chr_8 | 37829359 | 37834676 | + | gene_19177 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.81 | 117,169.85 Da | 42.46 | 97.10 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00118 | LysM | 192 | 234 | 1.62904E-4 | IPR018392 |
| CDD | cd00118 | LysM | 125 | 173 | 1.36719E-7 | IPR018392 |
| CDD | cd14066 | STKc_IRAK | 759 | 1024 | 1.15411E-89 | - |
| Pfam | PF13855 | Leucine rich repeat | 311 | 369 | 2.2E-8 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 546 | 583 | 0.88 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 755 | 1020 | 3.7E-53 | IPR000719 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 264 | 284 | 0.011 | IPR013210 |
| Pfam | PF01476 | LysM domain | 192 | 235 | 0.003 | IPR018392 |
| Pfam | PF01476 | LysM domain | 126 | 174 | 2.1E-8 | IPR018392 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 735 | 1023 | 1.5E-76 | IPR011009 |
| SUPERFAMILY | SSF54106 | LysM domain | 125 | 175 | 1.83E-5 | IPR036779 |
| SUPERFAMILY | SSF52058 | L domain-like | 283 | 654 | 4.08E-48 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 546 | 670 | 8.1E-30 | IPR032675 |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 124 | 181 | 2.7E-12 | IPR036779 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 255 | 544 | 8.8E-68 | IPR032675 |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 182 | 241 | 7.0E-7 | IPR036779 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 712 | 827 | 1.8E-33 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 828 | 1036 | 5.6E-59 | - |
| SMART | SM00257 | LysM_2 | 125 | 174 | 5.1E-9 | IPR018392 |
| SMART | SM00220 | serkin_6 | 753 | 1022 | 3.2E-37 | IPR000719 |
| SMART | SM00257 | LysM_2 | 191 | 235 | 0.054 | IPR018392 |
| SMART | SM00369 | LRR_typ_2 | 310 | 332 | 110.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 333 | 356 | 0.01 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 407 | 430 | 13.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 633 | 655 | 340.0 | IPR003591 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 190 | 234 | 11.304626 | IPR018392 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 124 | 173 | 12.629138 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 753 | 1026 | 40.357529 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 873 | 885 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 759 | 781 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23750.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_021749180.1 | receptor-like kinase TMK4 [Chenopodium quinoa] | 0 |
| Q9LK43 | Receptor-like kinase TMK4 OS=Arabidopsis thaliana OX=3702 GN=TMK4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LZJ6 | Protein kinase domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology