Basic Information
Locus ID:
gene_19149
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_10_Chr_8 | 37323943 | 37332997 | + | gene_19149 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.73 | 159,545.06 Da | 36.01 | 104.94 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 1006 | 1267 | 1.69674E-96 | - |
| CDD | cd00132 | CRIB | 1378 | 1406 | 0.0013007 | - |
| Pfam | PF13516 | Leucine Rich repeat | 758 | 772 | 1.3 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 365 | 384 | 1.3 | IPR001611 |
| Pfam | PF00786 | P21-Rho-binding domain | 1379 | 1405 | 1.1E-4 | IPR000095 |
| Pfam | PF13516 | Leucine Rich repeat | 599 | 616 | 1.4 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 173 | 232 | 2.5E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 245 | 304 | 2.1E-6 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 101 | 159 | 2.7E-8 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 1002 | 1266 | 2.3E-40 | IPR000719 |
| Pfam | PF00560 | Leucine Rich Repeat | 317 | 339 | 0.65 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 662 | 896 | 4.19E-49 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 980 | 1267 | 3.91E-75 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 212 | 505 | 4.08E-59 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 433 | 652 | 7.85E-40 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 34 | 306 | 2.79E-59 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 961 | 1075 | 8.1E-35 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1076 | 1276 | 1.9E-54 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 653 | 905 | 1.6E-60 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 546 | 652 | 3.7E-28 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 150 | 219 | 9.1E-17 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 386 | 545 | 2.2E-43 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 224 | 385 | 4.7E-54 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 34 | 149 | 2.6E-23 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 829 | 852 | 73.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 267 | 291 | 67.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 123 | 149 | 56.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 708 | 737 | 620.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 576 | 597 | 400.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 171 | 203 | 360.0 | - |
| SMART | SM00369 | LRR_typ_2 | 624 | 648 | 280.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 1000 | 1271 | 8.3E-30 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 708 | 732 | 29.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 757 | 783 | 160.0 | - |
| SMART | SM00369 | LRR_typ_2 | 853 | 876 | 56.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 195 | 218 | 39.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 600 | 626 | 270.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 433 | 459 | 120.0 | - |
| SMART | SM00369 | LRR_typ_2 | 576 | 600 | 10.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 267 | 293 | 230.0 | - |
| SMART | SM00369 | LRR_typ_2 | 433 | 457 | 5.9 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 829 | 855 | 76.0 | - |
| SMART | SM00369 | LRR_typ_2 | 757 | 781 | 33.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 171 | 194 | 70.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 123 | 147 | 21.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1000 | 1271 | 37.092575 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 734 | 756 | 7.172906 | IPR001611 |
| ProSiteProfiles | PS50108 | CRIB domain profile. | 1380 | 1393 | 8.625266 | IPR000095 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 1006 | 1028 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1122 | 1134 | - | IPR008271 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 433 | 446 | 4.1E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 126 | 139 | 4.1E-5 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1436 | 1467 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1439 | 1467 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07280.1 | Leucine-rich repeat transmembrane protein kinase. Encodes EMS1 (EXCESS MICROSPOROCYTES1), a putative leucine-rich repeat receptor protein kinase that controls somatic and reproductive cell fates in Arabidopsis anther. | 0 |
| RefSeq | XP_010673268.2 | leucine-rich repeat receptor protein kinase MSP1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8RZV7 | Leucine-rich repeat receptor protein kinase MSP1 OS=Oryza sativa subsp. japonica OX=39947 GN=MSP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LZN8 | Protein kinase domain-containing protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg24300 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_12615, gene_19149 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah007495, Ah014783 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g064650 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg19058, Sbi_jg37488, Sbi_jg59033, Sbi_jg63595 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg23294, Seu_jg5331 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00009952, GOSA_00012860 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl02451, Sgl07604, Sgl22180, Sgl22182, Sgl27423 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000011933, gene:ENSEOMG00000012383 ... |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.3AG0024440, CQ.Regalona.r1.3BG0025270 ... |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30163380, pistato.v30168000, pistato.v30273040 |
| Apiaceae | Apium graveolens | 1 | Ag5G02764 |
| Arecaceae | Cocos nucifera | 3 | COCNU_02G004770, COCNU_02G008420, COCNU_03G010600 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103703335, gene-LOC103709386, gene-LOC108511554 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_01.3119.V1.1, AsparagusV1_04.2511.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G07159, Ftri17G17993 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G78530.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10019485m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g33620.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g058100.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G0835 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G0958 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g11940 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g21740 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-9281 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG05.1343, evm.TU.LG05.1352, evm.TU.LG05.1362 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00024900, Pov_00025241 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G09871, Lb2G11177, Lb4G23198 |
| Poaceae | Echinochloa crus-galli | 4 | AH02.22, BH02.16, BH02.4341, CH02.12 |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_1AG0000050, gene-QOZ80_1AG0044410 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.3HG0252000.1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_051966, gene-QYE76_057379 |
| Poaceae | Oryza coarctata | 5 | Oco01G006570, Oco01G028370, Oco02G006800, Oco02G029440 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os01g14510.1, LOC_Os01g68870.2, LOC_Os02g10100.1 |
| Poaceae | Paspalum vaginatum | 5 | gene-BS78_03G001000, gene-BS78_03G380900, gene-BS78_K129000 ... |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0604095 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G002630, Chr05G031800, Chr0G014440, Chr21G016670 |
| Poaceae | Thinopyrum elongatum | 3 | Tel3E01G298000, Tel3E01G671400, Tel6E01G334200 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC3AG022900, gene_TRIDC3AG060040 ... |
| Poaceae | Triticum aestivum | 12 | TraesCS2D02G034200.1, TraesCS2D02G297600.2 ... |
| Poaceae | Zea mays | 4 | Zm00001eb118740_P002, Zm00001eb143420_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-44091 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g11802, Zma_g15121, Zma_g7148 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG09.1126, evm.TU.LG13.1621, evm.TU.LG21.1059 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g04120 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.148 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-11119 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-856 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-10641 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.93 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013983 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9115 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-15338 |
| Salicaceae | Populus euphratica | 2 | populus_peu00697, populus_peu17754 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132610707, gene-LOC132617822 |
| Solanaceae | Solanum chilense | 1 | SOLCI002356300 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107023948, gene-LOC107029631 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_11425, gene_6949 |
| Tamaricaceae | Tamarix chinensis | 2 | TC07G0024, TC12G2063 |
| Zosteraceae | Zostera marina | 1 | Zosma04g01550.v3.1 |