Basic Information
Locus ID:
gene_1909
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 3452724 | 3457779 | - | gene_1909 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.93 | 116,569.31 Da | 43.21 | 94.60 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 717 | 865 | 3.78532E-17 | - |
| CDD | cd00009 | AAA | 444 | 573 | 5.79896E-7 | - |
| Pfam | PF10431 | C-terminal, D2-small domain, of ClpB protein | 912 | 992 | 2.4E-23 | IPR019489 |
| Pfam | PF17871 | AAA lid domain | 591 | 662 | 7.8E-15 | IPR041546 |
| Pfam | PF00646 | F-box domain | 7 | 36 | 1.4E-4 | IPR001810 |
| Pfam | PF07724 | AAA domain (Cdc48 subfamily) | 742 | 905 | 1.3E-45 | IPR003959 |
| SUPERFAMILY | SSF81383 | F-box domain | 3 | 97 | 4.19E-10 | IPR036047 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 706 | 989 | 1.8E-65 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 443 | 661 | 1.47E-21 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 591 | 682 | 7.0E-18 | - |
| Gene3D | G3DSA:1.10.8.60 | - | 912 | 1016 | 8.8E-23 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 421 | 590 | 1.3E-28 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 698 | 910 | 4.2E-77 | IPR027417 |
| SMART | SM01086 | ClpB_D2_small_2 | 912 | 1003 | 1.4E-24 | IPR019489 |
| SMART | SM00382 | AAA_5 | 743 | 913 | 2.4E-9 | IPR003593 |
| SMART | SM00382 | AAA_5 | 459 | 577 | 4.8 | IPR003593 |
| ProSitePatterns | PS00871 | Chaperonins clpA/B signature 2. | 777 | 795 | - | IPR028299 |
| PRINTS | PR00300 | ATP-dependent Clp protease ATP-binding subunit signature | 792 | 810 | 7.3E-36 | IPR001270 |
| PRINTS | PR00300 | ATP-dependent Clp protease ATP-binding subunit signature | 821 | 839 | 7.3E-36 | IPR001270 |
| PRINTS | PR00300 | ATP-dependent Clp protease ATP-binding subunit signature | 747 | 765 | 7.3E-36 | IPR001270 |
| PRINTS | PR00300 | ATP-dependent Clp protease ATP-binding subunit signature | 854 | 868 | 7.3E-36 | IPR001270 |
| Coils | Coil | Coil | 514 | 534 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G48870.2 | Clp ATPase. Encodes a nuclear encoded protein with similarity to Clpa regulatory subunit of CLP protease complex. The protein is localized to the chloroplast stroma. May function redundantly with TIC complex in chloroplast protein import. | 0 |
| RefSeq | XP_021773417.1 | chaperone protein ClpC, chloroplastic-like [Chenopodium quinoa] | 0 |
| P31542 | ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4B, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CD4B PE=3 SV=1 | 0 | |
| TrEMBL | A0A803LGV4 | AAA domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 8 | gene_10790, gene_15721, gene_16719, gene_16720, gene_16746 ... |