Basic Information
Locus ID:
gene_18890
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
LRR receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_10_Chr_8 | 31416049 | 31418761 | + | gene_18890 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.53 | 87,065.47 Da | 41.98 | 104.86 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 612 | 667 | 7.4E-11 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 494 | 553 | 2.9E-9 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 23 | 45 | 1.3E-4 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 209 | 230 | 0.3 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 234 | 293 | 4.6E-10 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 392 | 692 | 1.17E-45 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 30 | 348 | 4.42E-58 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 235 | 360 | 7.0E-30 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 361 | 728 | 6.8E-93 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 16 | 154 | 2.6E-23 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 155 | 234 | 2.3E-20 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 654 | 677 | 47.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 111 | 135 | 24.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 256 | 280 | 88.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 159 | 183 | 64.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 540 | 564 | 11.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 654 | 683 | 44.0 | - |
| SMART | SM00369 | LRR_typ_2 | 630 | 653 | 39.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 516 | 539 | 250.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 207 | 231 | 18.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 540 | 559 | 14.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 280 | 300 | 110.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 207 | 237 | 170.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 492 | 515 | 530.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 135 | 161 | 32.0 | - |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 494 | 516 | 7.311519 | IPR001611 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 210 | 223 | 3.6E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 654 | 667 | 3.6E-5 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G04220.1 | receptor like protein 46. | 0 |
| RefSeq | XP_021741316.1 | leucine-rich repeat receptor protein kinase MSP1-like [Chenopodium quinoa] | 0 |
| F4JGB6 | Receptor-like protein 46 OS=Arabidopsis thaliana OX=3702 GN=RLP46 PE=3 SV=1 | 0 | |
| TrEMBL | A0A803MM93 | LRRNT_2 domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_18890 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah021381 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g056200 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000032386 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.3BG0017740 |
| Anacardiaceae | Pistacia vera | 6 | pistato.v30085600, pistato.v30085610, pistato.v30085720 ... |
| Apiaceae | Apium graveolens | 5 | Ag1G01409, Ag1G01533, Ag1G01534, Ag3G00393, Ag9G01364 |
| Arecaceae | Cocos nucifera | 1 | scaffold001583G000020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103718375 |
| Asteraceae | Flaveria trinervia | 2 | Ftri16G03062, Ftri16G18592 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G04220.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10027707m.g.v1.0, Thhalv10027711m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g02900.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB04g018820.2N, BniB04g018840.2N, BniB07g033940.2N |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.2115, evm.TU.LG15.1016 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.19 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-10341 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20621 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17663 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000018l.391 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002965 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-24363 |
| Salicaceae | Populus euphratica | 1 | populus_peu04482 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132607114 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8519 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1643 |