Basic Information
Locus ID:
gene_1884
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
FIZZY-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 3023751 | 3029536 | - | gene_1884 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.05 | 57,223.35 Da | 51.86 | 70.71 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 300 | 335 | 1.6E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 429 | 465 | 6.1E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 340 | 380 | 0.019 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 222 | 276 | 1.0E-4 | IPR024977 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 172 | 473 | 7.33E-59 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 161 | 469 | 1.3E-122 | IPR015943 |
| SMART | SM00320 | WD40_4 | 255 | 292 | 0.11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 383 | 423 | 480.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 212 | 252 | 0.12 | IPR001680 |
| SMART | SM00320 | WD40_4 | 168 | 209 | 140.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 426 | 465 | 2.6E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 296 | 335 | 4.1E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 338 | 380 | 0.0019 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 303 | 344 | 13.516088 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 433 | 466 | 11.919224 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 303 | 335 | 10.917412 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 433 | 466 | 14.41838 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 452 | 466 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 66 | 93 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 8 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22910.1 | FIZZY-related 2. | 0 |
| RefSeq | XP_021735944.1 | protein FIZZY-RELATED 2-like [Chenopodium quinoa] | 0 |
| Q9M7I2 | B-type cell cycle switch protein ccs52A OS=Medicago truncatula OX=3880 GN=CCS52A PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RXT9 | ANAPC4_WD40 domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_023120 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology