Basic Information
Locus ID:
gene_18756
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_10_Chr_8 | 26125562 | 26140654 | + | gene_18756 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.94 | 36,680.66 Da | 83.25 | 73.82 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 53 | 95 | 1.0E-8 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 49 | 102 | 7.07E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 48 | 111 | 3.7E-13 | IPR013083 |
| SMART | SM00184 | ring_2 | 54 | 94 | 1.0E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 54 | 95 | 12.326995 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 72 | 81 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 35 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39100.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021849133.1 | E3 ubiquitin-protein ligase Topors [Spinacia oleracea] | 0 |
| TrEMBL | A0A7C9EA95 | RING-type domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg28006 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_18756 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah020770 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000014254 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30235010 |
| Apiaceae | Apium graveolens | 3 | Ag5G02433, Ag6G02664, Ag6G02667 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G11029 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G39100.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10017000m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g21450.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g006040.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1195 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1286 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0200s00019.v1.0 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.1342 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00026176 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.2080, evm.TU.LG14.379 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.631 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-16059 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-524 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.373 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008217 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-13702 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-3605 |
| Salicaceae | Populus euphratica | 2 | populus_peu07948, populus_peu07957 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132641934 |
| Solanaceae | Solanum chilense | 1 | SOLCI001126700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107021579 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.26968_chr04_- |