Basic Information
Locus ID:
gene_18689
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
isoform X1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_10_Chr_8 | 21613920 | 21623793 | + | gene_18689 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.47 | 46,833.57 Da | 53.33 | 91.80 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 220 | 267 | 3.43326E-14 | - |
| Pfam | PF12906 | RING-variant domain | 220 | 266 | 5.8E-12 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 215 | 270 | 1.02E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 204 | 274 | 7.6E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 219 | 267 | 5.8E-16 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 212 | 273 | 19.690838 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 191 | 213 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 137 | 167 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 40 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06330.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021857690.1 | uncharacterized protein LOC110796910 [Spinacia oleracea] | 0 |
| TrEMBL | A0A0K9QS28 | RING-CH-type domain-containing protein (Fragment) OS=Spinacia oleracea OX=3562 GN=SOVF_148030 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology