Basic Information
Locus ID:
gene_1866
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Heat Stress Transcription Factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 2596957 | 2598905 | - | gene_1866 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.08 | 36,029.19 Da | 69.75 | 64.78 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00447 | HSF-type DNA-binding | 35 | 124 | 2.2E-32 | IPR000232 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 32 | 124 | 8.16E-36 | IPR036390 |
| Gene3D | G3DSA:1.10.10.10 | - | 27 | 125 | 4.1E-38 | IPR036388 |
| SMART | SM00415 | hsfneu3 | 31 | 124 | 6.4E-60 | IPR000232 |
| ProSitePatterns | PS00434 | HSF-type DNA-binding domain signature. | 74 | 98 | - | IPR000232 |
| PRINTS | PR00056 | Heat shock factor (HSF) domain signature | 35 | 58 | 5.4E-21 | IPR000232 |
| PRINTS | PR00056 | Heat shock factor (HSF) domain signature | 86 | 98 | 5.4E-21 | IPR000232 |
| PRINTS | PR00056 | Heat shock factor (HSF) domain signature | 73 | 85 | 5.4E-21 | IPR000232 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 165 | 190 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 322 | 339 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 263 | 339 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 303 | 320 | - | - |
| Coils | Coil | Coil | 197 | 224 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11660.1 | winged-helix DNA-binding transcription factor family protein. member of Heat Stress Transcription Factor (Hsf) family | 0 |
| RefSeq | XP_021863251.1 | heat stress transcription factor B-2b [Spinacia oleracea] | 0 |
| Q6Z9C8 | Heat stress transcription factor B-2b OS=Oryza sativa subsp. japonica OX=39947 GN=HSFB2B PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QAJ4 | HSF_DOMAIN domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_201140 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology