halophFGD

Basic Information

Locus ID: gene_18549

Species & Taxonomic ID: Mesembryanthemum crystallinum & 3544

Genome Assembly: Koichi Toyokura Assembly

Description: F-box protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Super-Scaffold_10_Chr_8	14335627	14336766	+	gene_18549

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.78	41,048.28 Da	46.79	79.52	-0.35

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF12937	F-box-like	2	33	1.8E-6	IPR001810
SUPERFAMILY	SSF81383	F-box domain	2	35	3.66E-8	IPR036047
Gene3D	G3DSA:1.20.1280.50	-	1	38	1.1E-7	-
ProSiteProfiles	PS50181	F-box domain profile.	1	31	8.83511	IPR001810

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_038678540.1	F-box/kelch-repeat protein At3g06240-like isoform X1 [Tripterygium wilfordii]	0
TrEMBL	A0A5D2NXF7	FBA_3 domain-containing protein OS=Gossypium tomentosum OX=34277 GN=ES332_A10G275900v1 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Aizoaceae	Mesembryanthemum crystallinum	18	gene_18345, gene_18346, gene_18375, gene_18411, gene_18412 ... gene_18414, gene_18416, gene_18417, gene_18418, gene_18419, gene_18549, gene_18551, gene_18554, gene_3917, gene_3918, gene_3919, gene_3977, gene_3978