Basic Information
Locus ID:
gene_18522
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_10_Chr_8 | 13046190 | 13048409 | + | gene_18522 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.19 | 30,468.18 Da | 53.67 | 68.28 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 219 | 261 | 5.44279E-19 | - |
| Pfam | PF13639 | Ring finger domain | 219 | 261 | 1.3E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 219 | 263 | 6.19E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 186 | 264 | 1.7E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 220 | 260 | 9.5E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 220 | 261 | 13.477729 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G73760.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_011069666.1 | probable E3 ubiquitin-protein ligase RHG1A isoform X2 [Sesamum indicum] | 0 |
| Q5QLR5 | Probable E3 ubiquitin-protein ligase ZFP1 OS=Oryza sativa subsp. japonica OX=39947 GN=ZFP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A067F986 | RING-type domain-containing protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g0024832mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 5 | gene_16691, gene_18522, gene_19539, gene_19766, gene_9814 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg52837 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9037 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103717452 |
| Solanaceae | Solanum chilense | 1 | SOLCI004904300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007023 |