Basic Information
Locus ID:
gene_185
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_2_Chr_2 | 3065312 | 3074147 | - | gene_185 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.92 | 55,971.38 Da | 45.01 | 102.22 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 95 | 137 | 3.20481E-26 | - |
| Pfam | PF04564 | U-box domain | 91 | 162 | 2.1E-20 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 179 | 487 | 9.95E-13 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 90 | 167 | 6.28E-29 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 176 | 487 | 3.2E-12 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 84 | 168 | 1.6E-27 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 94 | 157 | 3.3E-30 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 90 | 164 | 34.659218 | IPR003613 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 24 | 5.0 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 83 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 65 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_021719575.1 | U-box domain-containing protein 20-like [Chenopodium quinoa] | 0 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803LKZ9 | RING-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology