Basic Information
Locus ID:
gene_18418
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_10_Chr_8 | 9432229 | 9436997 | + | gene_18418 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.33 | 85,357.66 Da | 50.89 | 84.16 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 20 | 50 | 5.6E-4 | IPR001810 |
| Pfam | PF08268 | F-box associated domain | 243 | 351 | 6.8E-6 | IPR013187 |
| Pfam | PF00646 | F-box domain | 386 | 415 | 1.6E-4 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 17 | 95 | 5.63E-7 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 386 | 423 | 3.14E-7 | IPR036047 |
| SMART | SM00256 | fbox_2 | 22 | 62 | 0.0061 | IPR001810 |
| SMART | SM00256 | fbox_2 | 387 | 427 | 0.042 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 510 | 704 | 1.8E-16 | IPR017451 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 128 | 322 | 4.2E-21 | IPR017451 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G52320.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_008391463.1 | F-box protein CPR1-like [Malus domestica] | 0 |
| Q9FT50 | Putative F-box protein At3g52320 OS=Arabidopsis thaliana OX=3702 GN=At3g52320 PE=4 SV=1 | 0 | |
| TrEMBL | A0A830BV72 | F-box/kelch-repeat protein at3g23880 OS=Phtheirospermum japonicum OX=374723 GN=PHJA_001211700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 18 | gene_18345, gene_18346, gene_18375, gene_18411, gene_18412 ... |