halophFGD

Basic Information

Locus ID: gene_18417

Species & Taxonomic ID: Mesembryanthemum crystallinum & 3544

Genome Assembly: Koichi Toyokura Assembly

Description: F-box protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Super-Scaffold_10_Chr_8	9419467	9421016	+	gene_18417

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.46	42,880.74 Da	45.27	79.71	-0.38

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF81383	F-box domain	13	87	4.84E-10	IPR036047
Gene3D	G3DSA:1.20.1280.50	-	1	49	6.4E-6	-
SMART	SM00256	fbox_2	14	54	0.0017	IPR001810
TIGRFAM	TIGR01640	F_box_assoc_1: F-box protein interaction domain	181	295	2.9E-13	IPR017451

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G47730.1	F-box and associated interaction domains-containing protein.
RefSeq	XP_002300154.2	F-box/kelch-repeat protein At3g06240 [Populus trichocarpa]
Swiss-Prot	Q3ECH0	F-box protein At1g67130 OS=Arabidopsis thaliana OX=3702 GN=At1g67130 PE=2 SV=3
TrEMBL	B9GFU2	F-box domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G318400 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Aizoaceae	Mesembryanthemum crystallinum	18	gene_18345, gene_18346, gene_18375, gene_18411, gene_18412 ... gene_18414, gene_18416, gene_18417, gene_18418, gene_18419, gene_18549, gene_18551, gene_18554, gene_3917, gene_3918, gene_3919, gene_3977, gene_3978