Basic Information
Locus ID:
gene_18416
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_10_Chr_8 | 9412306 | 9414124 | + | gene_18416 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.66 | 50,600.83 Da | 43.27 | 73.11 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08268 | F-box associated domain | 268 | 362 | 1.4E-6 | IPR013187 |
| SUPERFAMILY | SSF81383 | F-box domain | 24 | 112 | 1.2E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 3 | 61 | 2.4E-5 | - |
| SMART | SM00256 | fbox_2 | 25 | 65 | 3.4E-4 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 210 | 369 | 1.2E-16 | IPR017451 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_050383097.1 | F-box/kelch-repeat protein At3g23880-like [Potentilla anserina] | 0 |
| TrEMBL | B9GFU2 | F-box domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G318400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 18 | gene_18345, gene_18346, gene_18375, gene_18411, gene_18412 ... |