Basic Information
Locus ID:
gene_18414
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Ripening-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_10_Chr_8 | 9369200 | 9380947 | + | gene_18414 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.63 | 47,104.43 Da | 52.74 | 76.93 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 15 | 51 | 4.2E-8 | IPR001810 |
| SUPERFAMILY | SSF50685 | Barwin-like endoglucanases | 320 | 425 | 1.74E-12 | IPR036908 |
| SUPERFAMILY | SSF81383 | F-box domain | 17 | 65 | 9.42E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 10 | 51 | 1.3E-7 | - |
| Gene3D | G3DSA:2.40.40.10 | - | 312 | 426 | 5.2E-14 | IPR036908 |
| SMART | SM00256 | fbox_2 | 17 | 57 | 2.3E-4 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21240.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_010670661.1 | kiwellin-1 [Beta vulgaris subsp. vulgaris] | 0 |
| A0A1D6GNR3 | Kiwellin-1 OS=Zea mays OX=4577 GN=KWL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803M2U7 | Kiwellin-like OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 18 | gene_18345, gene_18346, gene_18375, gene_18411, gene_18412 ... |