Basic Information
Locus ID:
gene_18411
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_10_Chr_8 | 9334624 | 9338685 | + | gene_18411 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.09 | 68,390.33 Da | 46.96 | 96.96 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 10 | 42 | 4.2E-6 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 344 | 559 | 4.0E-10 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 7 | 94 | 3.53E-10 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 2 | 45 | 3.3E-7 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 326 | 430 | 1.7E-9 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 470 | 570 | 8.7E-9 | IPR032675 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_008391463.1 | F-box protein CPR1-like [Malus domestica] | 0 |
| TrEMBL | A0A5N5GHI2 | F-box protein CPR30-like OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_035318 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 18 | gene_18345, gene_18346, gene_18375, gene_18411, gene_18412 ... |