Basic Information
Locus ID:
gene_18365
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
F-box FBD LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_10_Chr_8 | 7902471 | 7927028 | + | gene_18365 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.85 | 125,848.48 Da | 40.51 | 110.27 | 0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 101 | 134 | 2.6E-5 | IPR001810 |
| Pfam | PF00646 | F-box domain | 688 | 721 | 1.0E-5 | IPR001810 |
| Pfam | PF00646 | F-box domain | 399 | 433 | 3.2E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 396 | 442 | 1.09E-8 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 685 | 759 | 1.7E-10 | IPR036047 |
| SUPERFAMILY | SSF52058 | L domain-like | 786 | 1069 | 2.21E-10 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 184 | 695 | 1.73E-14 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 99 | 149 | 1.24E-8 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 780 | 1089 | 2.9E-12 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 507 | 716 | 1.7E-7 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 200 | 449 | 2.2E-11 | IPR032675 |
| SMART | SM00256 | fbox_2 | 692 | 733 | 6.8 | IPR001810 |
| SMART | SM00256 | fbox_2 | 105 | 146 | 6.0 | IPR001810 |
| SMART | SM00256 | fbox_2 | 403 | 444 | 1.7 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 99 | 152 | 9.762413 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 397 | 450 | 9.629941 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 686 | 738 | 9.868391 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G13570.2 | - | 0 |
| RefSeq | XP_048500083.1 | F-box/FBD/LRR-repeat protein At1g13570 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9FZ70 | F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana OX=3702 GN=At1g13570 PE=2 SV=1 | 0 | |
| TrEMBL | A0A4Y1RZ54 | F-box/RNI-like superfamily protein OS=Prunus dulcis OX=3755 GN=Prudu_022298 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 7 | gene_18365, gene_18366, gene_18368, gene_18369, gene_18371 ... |
| Amaranthaceae | Suaeda glauca | 3 | Sgl80012, Sgl80028, Sgl82459 |