halophFGD

Basic Information

Locus ID: gene_18346

Species & Taxonomic ID: Mesembryanthemum crystallinum & 3544

Genome Assembly: Koichi Toyokura Assembly

Description: F-box family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Super-Scaffold_10_Chr_8	7591853	7593028	+	gene_18346

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.13	40,622.14 Da	55.12	86.18	-0.30

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF81383	F-box domain	12	76	8.9E-9	IPR036047
Gene3D	G3DSA:1.20.1280.50	-	2	47	2.0E-6	-
SMART	SM00256	fbox_2	12	52	0.0033	IPR001810
TIGRFAM	TIGR01640	F_box_assoc_1: F-box protein interaction domain	172	270	1.1E-15	IPR017451

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G30920.1	F-box family protein.
RefSeq	XP_019079159.1	PREDICTED: F-box protein At5g65850-like [Vitis vinifera]
Swiss-Prot	P0C2G2	Putative F-box protein At1g30920 OS=Arabidopsis thaliana OX=3702 GN=At1g30920 PE=4 SV=1
TrEMBL	A0A6P5TL31	F-box protein CPR30-like OS=Prunus avium OX=42229 GN=LOC110768403 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Aizoaceae	Mesembryanthemum crystallinum	18	gene_18345, gene_18346, gene_18375, gene_18411, gene_18412 ... gene_18414, gene_18416, gene_18417, gene_18418, gene_18419, gene_18549, gene_18551, gene_18554, gene_3917, gene_3918, gene_3919, gene_3977, gene_3978