Basic Information
Locus ID:
gene_18345
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_10_Chr_8 | 7583828 | 7589455 | + | gene_18345 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.62 | 73,144.34 Da | 48.46 | 89.59 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 8 | 43 | 1.3E-5 | IPR001810 |
| Pfam | PF12937 | F-box-like | 247 | 280 | 1.3E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 7 | 54 | 6.8E-10 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 245 | 332 | 3.92E-12 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 3 | 47 | 4.3E-6 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 232 | 325 | 9.8E-9 | - |
| SMART | SM00256 | fbox_2 | 249 | 289 | 0.0029 | IPR001810 |
| SMART | SM00256 | fbox_2 | 8 | 48 | 8.2E-7 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 389 | 514 | 4.5E-14 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 8 | 48 | 9.470975 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23880.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_030931031.1 | F-box/kelch-repeat protein At3g06240-like [Quercus lobata] | 0 |
| Q9LIR8 | F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana OX=3702 GN=At3g23880 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N5KW19 | F-box domain-containing protein OS=Salix brachista OX=2182728 GN=DKX38_017725 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 18 | gene_18345, gene_18346, gene_18375, gene_18411, gene_18412 ... |