Basic Information
Locus ID:
gene_18313
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_10_Chr_8 | 6913157 | 6917603 | + | gene_18313 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.82 | 117,776.60 Da | 51.92 | 59.66 | -0.86 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 639 | 675 | 0.0056 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 783 | 809 | 0.0035 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 487 | 518 | 4.8E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 596 | 633 | 1.8E-7 | IPR001680 |
| SUPERFAMILY | SSF51004 | C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase | 181 | 534 | 2.35E-6 | IPR011048 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 482 | 812 | 1.36E-59 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 470 | 836 | 2.4E-63 | IPR015943 |
| SMART | SM00320 | WD40_4 | 677 | 716 | 4.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 594 | 633 | 7.0E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 768 | 809 | 9.1E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 480 | 519 | 6.5E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 636 | 675 | 5.6E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 727 | 767 | 17.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 487 | 521 | 11.339228 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 487 | 528 | 13.750016 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 642 | 676 | 10.495596 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 788 | 818 | 9.639578 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 642 | 676 | 12.613797 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 601 | 642 | 15.521181 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 601 | 636 | 12.367405 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 620 | 634 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 506 | 520 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 506 | 520 | 2.7E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 662 | 676 | 2.7E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 620 | 634 | 2.7E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 955 | 986 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 849 | 935 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 557 | 578 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 429 | 463 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 138 | 165 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 841 | 935 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 425 | 463 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 138 | 156 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 66 | 86 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37670.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_021854625.1 | uncharacterized protein LOC110793990 [Spinacia oleracea] | 0 |
| Q498F0 | WD repeat-containing protein 44 OS=Xenopus laevis OX=8355 GN=wdr44 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0J8CGL2 | WD_REPEATS_REGION domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_5g110220 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology