Basic Information
Locus ID:
gene_18285
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_10_Chr_8 | 6243514 | 6245473 | + | gene_18285 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.45 | 66,239.56 Da | 40.10 | 76.20 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07734 | F-box associated | 205 | 331 | 1.7E-7 | IPR006527 |
| Pfam | PF13456 | Reverse transcriptase-like | 406 | 523 | 6.2E-6 | IPR002156 |
| Gene3D | G3DSA:3.30.420.10 | - | 400 | 532 | 5.3E-6 | IPR036397 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 83 | 337 | 7.5E-23 | IPR017451 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_028753589.1 | F-box protein CPR1-like [Prosopis alba] | 0 |
| TrEMBL | A0A7C9B0C5 | F-box domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 15 | gene_12873, gene_12874, gene_18285, gene_18342, gene_18344 ... |