Basic Information
Locus ID:
gene_18283
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_10_Chr_8 | 6180002 | 6189901 | + | gene_18283 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.23 | 71,251.17 Da | 40.89 | 62.16 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13445 | RING-type zinc-finger | 441 | 493 | 6.0E-8 | IPR027370 |
| SUPERFAMILY | SSF57850 | RING/U-box | 434 | 497 | 2.69E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 430 | 532 | 5.6E-11 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 441 | 496 | 10.099292 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 460 | 469 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 341 | 376 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 141 | 163 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 93 | 114 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 238 | 276 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 93 | 125 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 149 | 163 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 7 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 341 | 377 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G29270.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021866329.1 | uncharacterized protein LOC110805035 [Spinacia oleracea] | 0 |
| Q9ZQ80 | Nodulin-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=NRP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RNN5 | RING-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_046410 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology