Basic Information
Locus ID:
gene_18276
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_10_Chr_8 | 5949575 | 5951252 | + | gene_18276 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.70 | 43,276.02 Da | 40.98 | 85.67 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 2 | 37 | 3.4E-9 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 2 | 68 | 9.03E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 42 | 1.0E-7 | - |
| SMART | SM00256 | fbox_2 | 4 | 44 | 1.6E-6 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 125 | 326 | 4.4E-21 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 45 | 11.828977 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G07870.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_023882205.1 | F-box/kelch-repeat protein At3g06240-like [Quercus suber] | 0 |
| Q9SFC7 | F-box protein At3g07870 OS=Arabidopsis thaliana OX=3702 GN=At3g07870 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5D2GAU9 | F-box domain-containing protein (Fragment) OS=Gossypium darwinii OX=34276 GN=ES288_A06G208900v1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 6 | gene_18276, gene_3818, gene_3820, gene_3821, gene_3822 ... |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g038860 |