Basic Information
Locus ID:
gene_18273
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
CSC1-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_10_Chr_8 | 5877167 | 5903839 | + | gene_18273 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.09 | 140,276.42 Da | 42.96 | 94.25 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 6 | 42 | 3.6E-6 | IPR001810 |
| Pfam | PF14703 | Cytosolic domain of 10TM putative phosphate transporter | 682 | 830 | 9.1E-19 | IPR027815 |
| Pfam | PF13967 | Late exocytosis, associated with Golgi transport | 556 | 661 | 6.7E-27 | IPR032880 |
| Pfam | PF02714 | Calcium-dependent channel, 7TM region, putative phosphate | 843 | 1112 | 3.0E-70 | IPR003864 |
| SUPERFAMILY | SSF81383 | F-box domain | 2 | 54 | 1.44E-10 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 2 | 42 | 2.3E-5 | - |
| SMART | SM00256 | fbox_2 | 5 | 45 | 9.6E-11 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 109 | 372 | 8.0E-21 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 50 | 9.894885 | IPR001810 |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69450.1 | Early-responsive to dehydration stress protein (ERD4). | 0 |
| RefSeq | XP_021747330.1 | CSC1-like protein At1g69450 [Chenopodium quinoa] | 0 |
| F4I248 | CSC1-like protein At1g69450 OS=Arabidopsis thaliana OX=3702 GN=At1g69450 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9ENG5 | CSC1-like protein At1g69450 OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology