Basic Information
Locus ID:
gene_18243
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
TATA box-binding protein-associated factor RNA polymerase I subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_10_Chr_8 | 5270452 | 5275044 | + | gene_18243 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.15 | 53,051.47 Da | 59.77 | 80.60 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | 304 | 346 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 282 | 303 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 282 | 346 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 154 | 187 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G02955.1 | maternal effect embryo arrest 12. | 0 |
| RefSeq | XP_021746667.1 | TATA box-binding protein-associated factor RNA polymerase I subunit B-like [Chenopodium quinoa] | 0 |
| Q5XVF0 | TATA box-binding protein-associated factor RNA polymerase I subunit B OS=Arabidopsis thaliana OX=3702 GN=MEE12 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RTJ9 | TATA box-binding protein-associated factor RNA polymerase I subunit B OS=Spinacia oleracea OX=3562 GN=SOVF_029850 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg2700 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_18242, gene_18243 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah003119, Ah014120 |
| Amaranthaceae | Beta vulgaris | 3 | BVRB_5g121580, BVRB_6g153940, BVRB_9g222130 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg42513, Sbi_jg45144 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg27027 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005681 |
| Amaranthaceae | Suaeda glauca | 7 | Sgl35554, Sgl35586, Sgl35587, Sgl35593, Sgl40919, Sgl40920 ... |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000002558, gene:ENSEOMG00000012737 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.6AG0001130 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30027330 |
| Apiaceae | Apium graveolens | 4 | Ag10G00071, Ag6G00389, Ag6G00413, Ag6G00415 |
| Arecaceae | Cocos nucifera | 2 | COCNU_09G004120, scaffold009484G000020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103706392 |
| Asparagaceae | Asparagus officinalis | 6 | AsparagusV1_10.378.V1.1, AsparagusV1_10.379.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri1G05306 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G02955.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10004418m.g.v1.0, Thhalv10027666m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g05500.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g001510.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq07G0109, Ceq07G1838 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl07G0100, Cgl07G2010 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g07350 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0050s00007.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 4 | gene.Thate01g07870, gene.Thate05g04920, gene.Thate07g06160 ... |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.248 |
| Plantaginaceae | Plantago ovata | 4 | Pov_00005501, Pov_00012842, Pov_00012853, Pov_00019322 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G27063 |
| Poaceae | Echinochloa crus-galli | 7 | AH05.2866, AH08.587, BH05.2884, BH05.2962, BH09.89, CH09.32 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_4AG0327260, gene-QOZ80_4BG0359220 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0062080.1, HORVU.MOREX.r3.6HG0543620.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_000925, gene-QYE76_012962, gene-QYE76_019569 |
| Poaceae | Oryza coarctata | 2 | Oco09G007110, Oco10G007380 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g28460.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G180500 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0503512 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr01G022250 |
| Poaceae | Thinopyrum elongatum | 3 | Tel1E01G376600, Tel6E01G090300, Tel6E01G090500 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG033680, gene_TRIDC1BG039040 ... |
| Poaceae | Triticum aestivum | 7 | TraesCS1A02G223100.1, TraesCS1B02G236400.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb284870_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-17773, nbis-gene-52464 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g27975 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.243, evm.TU.LG12.1459 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g15970, gene.Posoc05g12530 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.450 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2025 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-9715 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.688 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-2577 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-16533 |
| Salicaceae | Populus euphratica | 1 | populus_peu20612 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132600708 |
| Solanaceae | Solanum chilense | 2 | SOLCI002775700, SOLCI006502900 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107004800, gene-LOC107031274 |
| Tamaricaceae | Reaumuria soongarica | 2 | MSTRG.3942_chr02_-, gene_13396 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G2118 |
| Zosteraceae | Zostera marina | 1 | Zosma01g37930.v3.1 |