Basic Information
Locus ID:
gene_18207
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
Synaptotagmin-like mitochondrial-lipid-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr09 | 142197189 | 142219098 | + | gene_18207 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.96 | 63,905.63 Da | 33.05 | 102.61 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 443 | 539 | 1.63233E-27 | - |
| CDD | cd00030 | C2 | 264 | 366 | 2.13368E-26 | - |
| Pfam | PF00168 | C2 domain | 262 | 366 | 1.3E-21 | IPR000008 |
| Pfam | PF00168 | C2 domain | 441 | 542 | 2.4E-23 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 70 | 249 | 1.2E-15 | IPR039010 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 260 | 391 | 5.41E-29 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 438 | 560 | 4.13E-31 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 258 | 395 | 9.4E-31 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 425 | 560 | 7.2E-33 | IPR035892 |
| SMART | SM00239 | C2_3c | 263 | 363 | 8.7E-20 | IPR000008 |
| SMART | SM00239 | C2_3c | 442 | 540 | 2.2E-21 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 67 | 249 | 31.249403 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 243 | 364 | 19.97348 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 424 | 541 | 20.541616 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 506 | 514 | 1.6E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 458 | 470 | 1.6E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 484 | 497 | 1.6E-6 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_010696554.1 | synaptotagmin-5 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| A0JJX5 | Synaptotagmin-4 OS=Arabidopsis thaliana OX=3702 GN=SYT4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9EDV8 | Synaptotagmin-5 OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology