Basic Information
Locus ID:
gene_18202
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr09 | 141668282 | 141677441 | + | gene_18202 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.30 | 28,596.71 Da | 31.89 | 80.30 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 12 | 46 | 0.02 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 143 | 169 | 0.001 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 12 | 265 | 3.36E-37 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 98 | 172 | 3.7E-14 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 4 | 97 | 3.8E-13 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 173 | 267 | 1.7E-19 | IPR015943 |
| SMART | SM00320 | WD40_4 | 49 | 88 | 0.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 2 | 46 | 0.0089 | IPR001680 |
| SMART | SM00320 | WD40_4 | 117 | 169 | 0.0013 | IPR001680 |
| SMART | SM00320 | WD40_4 | 193 | 265 | 0.041 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 10 | 46 | 9.539323 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G29830.1 | Transducin/WD40 repeat-like superfamily protein. The protein is composed of repeats of WD motif which is involved in protein complex formation. The gene is involved in flower timing and flower development. This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase. Loss of gene function leads to a redistribution of H3K4me3 and K3K36me2 modifications within genes but not a change in the overall abundance of these modifications within chromatin. | 0 |
| RefSeq | XP_043701738.1 | WD repeat-containing protein VIP3 [Telopea speciosissima] | 0 |
| Q9SZQ5 | WD repeat-containing protein VIP3 OS=Arabidopsis thaliana OX=3702 GN=VIP3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2Q509 | WD repeat-containing protein VIP3 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg32892 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_25173 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah037057, Ah037058 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g042780 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30160, Sbi_jg43604 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18298 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004059 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl66047, Sgl70364 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000019882, gene:ENSEOMG00000034265 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0018430, CQ.Regalona.r1.1BG0003980 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30259750 |
| Apiaceae | Apium graveolens | 1 | AgUnG01343 |
| Arecaceae | Cocos nucifera | 3 | COCNU_01G000600, COCNU_04G010020, COCNU_14G007390 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103723722 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.2088.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G20638 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G29830.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10027356m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g27640.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g011220.2N, BniB05g007880.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0821 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G0845 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g09450 |
| Dunaliellaceae | Dunaliella salina | 5 | Dusal.0051s00019.v1.0, Dusal.0103s00026.v1.0 ... |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g30150 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.1279 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00039599 |
| Poaceae | Echinochloa crus-galli | 3 | AH04.2120, BH04.2203, CH04.2537 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0691780, gene-QOZ80_9BG0709270 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0363150.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_065660 |
| Poaceae | Oryza coarctata | 2 | Oco21G009380, Oco22G010780 |
| Poaceae | Oryza sativa | 1 | LOC_Os11g43890.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G231600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0103410 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr07G014610, Chr31G008020 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G230500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG026360, gene_TRIDC4BG024920 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G165700.1, TraesCS4B02G144300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb165440_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-37626, nbis-gene-37627, nbis-gene-46011 |
| Poaceae | Zoysia macrostachya | 4 | Zma_g18256, Zma_g18257, Zma_g18267, Zma_g19125 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.2518, evm.TU.LG17.1561 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g20940, gene.Posoc05g10640 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.60383.4, evm.TU.60384.4 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-12976 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-12790 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16932 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000033l.381 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014747 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4001 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-8161 |
| Salicaceae | Populus euphratica | 1 | populus_peu11887 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132636898 |
| Solanaceae | Solanum chilense | 1 | SOLCI006027900 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107005340, gene-LOC107023996 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.5088_chr03_+, gene_18202 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G0490 |
| Zosteraceae | Zostera marina | 1 | Zosma03g19170.v3.1 |