Basic Information
Locus ID:
gene_18198
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
BEST Arabidopsis thaliana protein match is
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_10_Chr_8 | 4177046 | 4188046 | + | gene_18198 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.05 | 59,952.65 Da | 52.11 | 74.82 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04601 | Domain of unknown function (DUF569) | 1 | 143 | 8.9E-51 | IPR007679 |
| Pfam | PF04601 | Domain of unknown function (DUF569) | 200 | 338 | 1.6E-73 | IPR007679 |
| SUPERFAMILY | SSF50405 | Actin-crosslinking proteins | 204 | 342 | 6.28E-25 | IPR008999 |
| SUPERFAMILY | SSF50405 | Actin-crosslinking proteins | 8 | 145 | 9.37E-18 | IPR008999 |
| Gene3D | G3DSA:2.80.10.50 | - | 4 | 128 | 3.8E-13 | - |
| Gene3D | G3DSA:2.80.10.50 | - | 208 | 326 | 5.0E-19 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 351 | 405 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 368 | 404 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G27100.1 | Actin cross-linking protein. | 0 |
| RefSeq | XP_021731141.1 | uncharacterized protein LOC110698043 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A7C8ZKK4 | DUF569 domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology