Basic Information
Locus ID:
gene_18171
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
BTB POZ domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_10_Chr_8 | 3656783 | 3662280 | + | gene_18171 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.38 | 70,994.33 Da | 48.63 | 85.86 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03000 | NPH3 family | 279 | 520 | 4.4E-46 | IPR027356 |
| SUPERFAMILY | SSF54695 | POZ domain | 73 | 165 | 1.1E-7 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 70 | 173 | 5.0E-5 | IPR011333 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 275 | 544 | 52.231251 | IPR027356 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G17580.1 | Phototropic-responsive NPH3 family protein. | 0 |
| RefSeq | XP_021842809.1 | BTB/POZ domain-containing protein At3g03510-like [Spinacia oleracea] | 0 |
| Q9SRQ5 | BTB/POZ domain-containing protein At3g03510 OS=Arabidopsis thaliana OX=3702 GN=At3g03510 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0J8BBH3 | NPH3 domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_6g156040 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg1692, jg29103, jg29104 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_18171 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah013414, Ah015195 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg43051, Sbi_jg45652 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg11496 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00002016 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl35807, Sgl35813, Sgl41084, Sgl41122 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000012178, gene:ENSEOMG00000045914 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0014940, CQ.Regalona.r1.8BG0016290 |
| Apiaceae | Apium graveolens | 1 | Ag1G00365 |
| Asteraceae | Flaveria trinervia | 1 | Ftri12G03834 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G03510.1, AT5G17580.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10015963m.g.v1.0, Thhalv10022312m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g02500.v2.2, Sp6g26640.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g059850.2N, BniB02g045290.2N |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g07590 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g13650 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.1884 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00031221, Pov_00038962 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.348, evm.TU.LG12.1360 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g19770 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.508, evm.TU.Scaffold_1_RagTag.516 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-7654 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3763 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-5536 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000012l.313 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-20118 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-648 |
| Salicaceae | Populus euphratica | 2 | populus_peu33561, populus_peu33562 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132612655, gene-LOC132645135 |
| Solanaceae | Solanum chilense | 2 | SOLCI001011800, SOLCI004575200 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107022477, gene-LOC107024825 |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G0315 |
| Zosteraceae | Zostera marina | 1 | Zosma05g11550.v3.1 |