halophFGD

Basic Information

Locus ID: gene_18021

Species & Taxonomic ID: Mesembryanthemum crystallinum & 3544

Genome Assembly: Koichi Toyokura Assembly

Description: May play an essential role at the early stage of chromosomal DNA replication by coupling the polymerase alpha primase complex to the cellular replication machinery

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Super-Scaffold_10_Chr_8	1170641	1175210	+	gene_18021

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.18	57,651.38 Da	46.90	93.81	-0.13

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF81383	F-box domain	48	99	6.93E-10	IPR036047
Gene3D	G3DSA:3.60.21.60	-	396	502	6.6E-12	-
Gene3D	G3DSA:1.20.1280.50	-	46	100	4.7E-8	-
SMART	SM00256	fbox_2	49	90	0.0053	IPR001810

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K02321 (DNA polymerase alpha subunit B)

Pathway:

ko00230 (Purine metabolism) map00230 (Purine metabolism) ko00240 (Pyrimidine metabolism) map00240 (Pyrimidine metabolism) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko03030 (DNA replication) map03030 (DNA replication)

Reaction:

R00375 (dATP + DNA <=> Diphosphate + DNA) R00376 (dGTP + DNA <=> Diphosphate + DNA) R00377 (dCTP + DNA <=> Diphosphate + DNA) R00378 (dTTP + DNA <=> Diphosphate + DNA)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G67630.1	DNA polymerase alpha 2.
RefSeq	XP_010687708.2	uncharacterized protein LOC104901791 [Beta vulgaris subsp. vulgaris]
TrEMBL	A0A0K9Q970	F-box domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_205390 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg9317
Aizoaceae	Mesembryanthemum crystallinum	32	gene_11432, gene_12899, gene_16124, gene_16294, gene_17039 ... gene_17180, gene_17196, gene_17197, gene_17200, gene_18016, gene_18021, gene_18965, gene_19195, gene_19366, gene_22440, gene_22441, gene_24323, gene_24456, gene_25700, gene_26294, gene_26297, gene_296, gene_3365, gene_3511, gene_3514, gene_3681, gene_3682, gene_3683, gene_4787, gene_8042, gene_8044, gene_9777
Amaranthaceae	Atriplex hortensis	6	Ah009392, Ah018492, Ah018497, Ah018498, Ah035583, Ah035814
Amaranthaceae	Beta vulgaris	1	BVRB_8g192230
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg55775, Sbi_jg55776
Amaranthaceae	Salicornia europaea	2	Seu_jg26284, Seu_jg26285
Amaranthaceae	Suaeda aralocaspica	4	GOSA_00017849, GOSA_00017850, GOSA_00022226, GOSA_00022227
Amaranthaceae	Suaeda glauca	5	Sgl01211, Sgl06296, Sgl06297, Sgl43382, Sgl48185
Amaranthaceae	Chenopodium album	7	gene:ENSEOMG00000000754, gene:ENSEOMG00000003575 ... gene:ENSEOMG00000006068, gene:ENSEOMG00000024464, gene:ENSEOMG00000031153, gene:ENSEOMG00000043576, gene:ENSEOMG00000045556
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.3AG0006140, CQ.Regalona.r1.3AG0006160 ... CQ.Regalona.r1.3BG0006260, CQ.Regalona.r1.3BG0006270, CQ.Regalona.r1.3BG0015330, CQ.Regalona.r1.6AG0014300
Apiaceae	Apium graveolens	1	Ag3G00815
Asparagaceae	Asparagus officinalis	1	AsparagusV1_01.443.V1.1
Asteraceae	Flaveria trinervia	2	Ftri13G27858, Ftri18G32677
Casuarinaceae	Casuarina equisetifolia	1	Ceq03G2689
Casuarinaceae	Casuarina glauca	1	Cgl03G2822
Nitrariaceae	Nitraria sibirica	4	evm.TU.LG02.136, evm.TU.LG04.1772, evm.TU.LG04.1773 ... evm.TU.LG04.1774
Plantaginaceae	Plantago ovata	1	Pov_00027119
Portulacaceae	Portulaca oleracea	9	evm.TU.LG02.1381, evm.TU.LG04.894, evm.TU.LG04.895 ... evm.TU.LG09.587, evm.TU.LG10.21, evm.TU.LG11.1317, evm.TU.LG11.1318, evm.TU.LG11.1319, evm.TU.LG11.1320
Rhizophoraceae	Bruguiera sexangula	6	evm.TU.31081.1, evm.TU.Scaffold_18_RagTag.639 ... evm.TU.Scaffold_18_RagTag.722, evm.TU.Scaffold_1_RagTag.146, evm.TU.Scaffold_2_RagTag.2025, evm.TU.Scaffold_5_RagTag.829
Rhizophoraceae	Carallia pectinifolia	24	nbisL1-mrna-17670, nbisL1-mrna-19273, nbisL1-mrna-20346 ... nbisL1-mrna-20558, nbisL1-mrna-21078, nbisL1-mrna-21079, nbisL1-mrna-22506, nbisL1-mrna-27543, nbisL1-mrna-27551, nbisL1-mrna-27580, nbisL1-mrna-27584, nbisL1-mrna-27659, nbisL1-mrna-27660, nbisL1-mrna-27730, nbisL1-mrna-27740, nbisL1-mrna-27771, nbisL1-mrna-27782, nbisL1-mrna-31027, nbisL1-mrna-3389, nbisL1-mrna-3448, nbisL1-mrna-3449, nbisL1-mrna-3450, nbisL1-mrna-3451, nbisL1-mrna-7985
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-15588, nbisL1-mrna-19249
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-11465, nbisL1-mrna-13714
Rhizophoraceae	Kandelia candel	3	add.evm.TU.utg000009l.26, add.evm.TU.utg000012l.40 ... add.evm.TU.utg000023l.12
Rhizophoraceae	Kandelia obovata	1	Maker00005027
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-19727, nbisL1-mrna-19901
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-136, nbisL1-mrna-14828, nbisL1-mrna-22879 ... nbisL1-mrna-24313
Salicaceae	Populus euphratica	4	populus_peu18487, populus_peu18522, populus_peu36623 ... populus_peu36624
Solanaceae	Lycium barbarum	5	gene-LOC132599988, gene-LOC132606524, gene-LOC132624588 ... gene-LOC132628775, gene-LOC132633271
Solanaceae	Solanum chilense	1	SOLCI002997200
Solanaceae	Solanum pennellii	1	gene-LOC107032338
Tamaricaceae	Reaumuria soongarica	2	STRG.19857_chr07_+, STRG.6052_chr04_-
Tamaricaceae	Tamarix chinensis	2	TC06G2719, TC08G0531