Basic Information
Locus ID:
gene_18014
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_10_Chr_8 | 1030546 | 1032970 | + | gene_18014 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.99 | 49,500.58 Da | 41.20 | 65.73 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 386 | 425 | 1.2E-7 | IPR002893 |
| SUPERFAMILY | SSF81901 | HCP-like | 178 | 297 | 9.42E-13 | - |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 380 | 431 | 1.71E-10 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 109 | 175 | 6.21E-7 | IPR036047 |
| Gene3D | G3DSA:6.10.140.2220 | - | 377 | 430 | 2.0E-10 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 165 | 309 | 2.9E-18 | IPR011990 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 383 | 425 | 10.997721 | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 435 | 459 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_010682773.1 | F-box protein At1g67340 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9S0F6 | MYND-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_013430 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology